nf-core
Here are 159 public repositories matching this topic...
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
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Jun 1, 2024 - Nextflow
Workflow management with Nextflow and nf-core
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May 31, 2024 - Nextflow
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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Jun 1, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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May 31, 2024 - Nextflow
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
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Jun 1, 2024 - Nextflow
Parallelised and automated construction of metagenomic classifier databases of different tools
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May 30, 2024 - Nextflow
Pipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.
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May 30, 2024 - Nextflow
(Meta-)genome screening for functional and natural product gene sequences
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May 30, 2024 - Nextflow
A single-cell RNAseq pipeline for 10X genomics data
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May 29, 2024 - Nextflow
Call and score variants from WGS/WES of rare disease patients.
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May 29, 2024 - Nextflow
A nextflow variant benchmarking pipeline - premature
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May 29, 2024 - Nextflow
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
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May 29, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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May 28, 2024 - Nextflow
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