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Pull requests: nf-core/modules

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Pull requests list

Revert "nf-test bamaligncleaner + test out nft-bam" ready to merge
#5758 opened Jun 5, 2024 by k1sauce Loading…
@k1sauce
chore(deps): update pre-commit hook renovatebot/pre-commit-hooks to v37.392.0
#5757 opened Jun 5, 2024 by renovate bot Loading…
2 tasks
Swap samtools collatefastq to nf-test
#5754 opened Jun 5, 2024 by SPPearce • Draft
1
Added merqury/hapmers
#5751 opened Jun 5, 2024 by GallVp Loading…
11 of 17 tasks
1
1
Add bcftools csi and tbi outputs
#5747 opened Jun 4, 2024 by fellen31 • Draft
17 tasks
Add modkit pileup
#5746 opened Jun 4, 2024 by fellen31 • Draft
17 tasks
1
6
added nf-tests for crisprcleanr/normalize module
#5740 opened Jun 3, 2024 by LeonHornich Loading…
3
Allow picard/collecthsmetrics to be feeded the same input bed file twice
#5738 opened Jun 2, 2024 by rollf Loading…
3
remove renovate-config-validator updates
#5737 opened Jun 1, 2024 by mashehu Loading…
Adding CircularMapper/realignsamfile
#5728 opened May 31, 2024 by jbv2 • Draft
17 tasks
4
Update LAST modules
#5727 opened May 31, 2024 by charles-plessy Loading…
15 of 17 tasks
19
Handle empty files, remove read group parsing Ready for Review ready to merge
#5720 opened May 29, 2024 by k1sauce Loading…
1
1
Update stranger
#5717 opened May 29, 2024 by fellen31 • Draft
17 tasks
Convert ultraplex to nf-test Ready for Review
#5706 opened May 28, 2024 by SPPearce Loading…
9
Update interproscan
#5688 opened May 24, 2024 by mahesh-panchal Loading…
14 of 17 tasks
5
Add new module: RTN/TNA new module Adding a new module
#5687 opened May 24, 2024 by mribeirodantas • Draft
1 of 17 tasks
@mribeirodantas
bcftools isec input can be bcf or bcf.gz as well as vcf.gz
#5685 opened May 23, 2024 by RuthEberhardt Loading…
17 tasks
2
sageproteomics/sage
#5677 opened May 22, 2024 by dgemperline-lilly Loading…
10 of 17 tasks
5
First Neuroimaging module : denoising/nlmeans
#5673 opened May 22, 2024 by AlexVCaron Loading…
9 of 17 tasks
1
14
[DRAFT] Add CAT_pack download module
#5668 opened May 22, 2024 by pmoradi2023 Loading…
17 tasks
New module FQ2BAMFAST
#5647 opened May 21, 2024 by mribeirodantas Loading…
9 of 17 tasks
2
Add GMM-Demux
#5641 opened May 21, 2024 by mari-ga Loading…
10 of 17 tasks
53
Add module muse/call and Dockerfile
#5630 opened May 17, 2024 by famosab Loading…
8 of 17 tasks
1
2
Add module muse/sump
#5629 opened May 17, 2024 by famosab Loading…
8 of 17 tasks
1
2
Bump fgbio versions and swap to nftest Ready for Review
#5624 opened May 17, 2024 by SPPearce Loading…
42
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