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@uio-bmi

Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

Pinned

  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 58 29

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 24 5

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 17 6

Repositories

Showing 10 of 81 repositories
  • IN-BIOSx000 Public Forked from arvindsundaram/IN-BIOSx000

    Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo

    uio-bmi/IN-BIOSx000’s past year of commit activity
    Python 0 CC0-1.0 10 0 0 Updated Jun 18, 2024
  • dagsim Public

    A framework and specification language for simulating data based on graphical models

    uio-bmi/dagsim’s past year of commit activity
    Python 18 AGPL-3.0 3 1 0 Updated Jun 14, 2024
  • fdr_hacking Public
    uio-bmi/fdr_hacking’s past year of commit activity
    Python 2 MIT 0 0 2 Updated Jun 13, 2024
  • immuneml_tools Public

    Galaxy tools using the immuneML conda package.

    uio-bmi/immuneml_tools’s past year of commit activity
    Python 1 0 0 0 Updated Jun 12, 2024
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    uio-bmi/immuneML’s past year of commit activity
    Python 58 AGPL-3.0 29 0 1 Updated Jun 12, 2024
  • StarSignDNA Public
    uio-bmi/StarSignDNA’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 11, 2024
  • ligo Public

    LIgO is a tool for simulation of adaptive immune receptors and repertoires.

    uio-bmi/ligo’s past year of commit activity
    Python 0 AGPL-3.0 1 0 0 Updated May 27, 2024
  • kmercount Public

    Simple kmer counter using Bloom filter and efficient hash function

    uio-bmi/kmercount’s past year of commit activity
    C++ 2 AGPL-3.0 1 3 0 Updated May 2, 2024
  • localega-tsd-proxy Public
    uio-bmi/localega-tsd-proxy’s past year of commit activity
    Java 0 MIT 0 6 2 Updated Apr 19, 2024
  • SimCal Public

    Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

    uio-bmi/SimCal’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 22, 2024
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