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Achievements

Achievement: Pull SharkAchievement: Starstruckx3Achievement: QuickdrawAchievement: Arctic Code Vault Contributor
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@uio-bmi @ous-mik
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torognes/README.md

Hi there 👋

  • 🔭 I’m working on improving the tools VSEARCH and Swarm for microbiome bioinformatics.
  • 🤔 I’m often thinking about new ideas for how we can use clever algorithms and data structures to improve bioinformatics tools.
  • I'm teaching the course IN4030 Introduction to bioinformatics at the University of Oslo every spring semester.
  • In the fall of 2024, I'll be organizing the course IN-BIOS5000/9000 Sequencing technologies, data analysis, and applications.
  • I'm also involved in various projects at Oslo University Hospital (OUS), including Publika, a publication database for OUS.

Pinned

  1. vsearch vsearch Public

    Versatile open-source tool for microbiome analysis

    C++ 635 122

  2. swarm swarm Public

    A robust and fast clustering method for amplicon-based studies

    C++ 119 23

  3. swipe swipe Public

    Smith-Waterman database searches with inter-sequence SIMD parallelisation

    C++ 58 21

  4. uio-bmi/compairr uio-bmi/compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 24 5

  5. enigma enigma Public

    Enigma cipher tool

    C++ 20 2

  6. uio-bmi/kmercount uio-bmi/kmercount Public

    Simple kmer counter using Bloom filter and efficient hash function

    C++ 2 1