Supplementary scripts for Nelson et al. (2020) paper on ORF3d
python
r
perl
biopython
overlapping-genes
within-host
covid-19
sars-cov-2
orf3d
olgenie
snpgenie
between-host
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Updated
Nov 5, 2020 - R
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within-host
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This repository contains a script for analyzing SARS-CoV-2 evolution in epitopes during the first two waves of the COVID-19 pandemic. The immunological data come from a high protein density array analysis of SARS-CoV-2 epitopes in 15 patients (N'Guessan A. et al., 2022). This script and the related data can be updated manually to integrate data …
evolution
transmission
delta
selection
immunology
omicron
within-host
sars-cov-2
immune-escape
variants-of-interest
variants-of-concern
-
Updated
Feb 15, 2022 - R
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