a browser-based DICOM viewer
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Updated
Jun 3, 2024 - JavaScript
a browser-based DICOM viewer
Awesome List of Digital and Computational Pathology Resources
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
Patoloji Atlası
Pathology Atlas (English version of Patoloji Atlası)
QuPath - Bioimage analysis & digital pathology
An open source online platform for collaborative image labeling of almost everything
A curated list of awesome Multi-instance Learning frameworks for Whole Slide Images (WSIs) classification, segmentation, etc.
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Read and write TIFF files
CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
Digital pathology image viewer with support for human/machine generated annotations and markups.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
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