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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

Pinned

  1. TriPath TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 61 3

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 188 24

  3. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 149 10

  4. CLAM CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 909 319

  5. HIPT HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 464 83

  6. PathomicFusion PathomicFusion Public

    Fusing Histology and Genomics via Deep Learning - IEEE TMI

    Jupyter Notebook 254 76

Repositories

Showing 10 of 23 repositories
  • Patch-GCN Public

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    Python 103 GPL-3.0 29 5 1 Updated May 14, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 61 3 0 0 Updated May 10, 2024
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 909 GPL-3.0 319 10 4 Updated Apr 29, 2024
  • CPATH_demographics Public

    Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

    Python 12 2 0 0 Updated Apr 29, 2024
  • JavaScript 0 MIT 0 0 0 Updated Apr 7, 2024
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 149 10 3 0 Updated Apr 6, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 188 24 11 1 Updated Mar 29, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    Python 45 2 1 0 Updated Mar 25, 2024
  • HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 464 83 19 3 Updated Mar 19, 2024
  • MAPS Public

    Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

    Jupyter Notebook 30 5 0 0 Updated Mar 14, 2024

People

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