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8 public repositories
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Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Jul 7, 2023
Python
Learning the Variant Call Format
Updated
Mar 25, 2024
Perl
BioC++ Input/Output library
Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).
Updated
Dec 16, 2018
Python
A command-line parser for VCF files designed for population genetics analyses.
Updated
Apr 14, 2023
Java
Convert an standard VCF to JSON format
Updated
Jun 12, 2020
Python
Modify KASP assay calls to a VCF format
Updated
May 21, 2024
Shell
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