Spatial Single Cell Analysis in Python
data-visualization
spatial-analysis
image-analysis
single-cell-genomics
single-cell-rna-seq
spatial-transcriptomics
squidpy
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Updated
May 21, 2024 - Python
Spatial Single Cell Analysis in Python
Learning cell communication from spatial graphs of cells
A bioinformatics web app for single cell RNA seq analysis.
Explore spatial organization of a mouse brain coronal section with Scanpy and Squidpy in this GitHub repository. Analyze cell interactions, visualize distributions, and uncover patterns using various data exploration and spatial analysis techniques.
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