snakemake
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A rapid pipeline for targeted ONT monkeypox sequencing
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Jun 5, 2024 - Python
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
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Jun 5, 2024 - Python
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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Jun 5, 2024 - Python
Metagenomics and Metatranscriptomics pipeline
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Jun 5, 2024 - Python
This is the development home of the workflow management system Snakemake. For general information, see
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Jun 5, 2024 - HTML
RNA-seq workflow using STAR and DESeq2
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Jun 5, 2024 - Python
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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Jun 6, 2024 - Python
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Jun 5, 2024 - Python
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
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Jun 5, 2024 - Python
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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Jun 5, 2024 - Python
PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
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Jun 6, 2024 - Python
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Jun 5, 2024 - Python
Estimación de turbidez en el agua a la entrada de la planta de tratamiento de SAMEEP, utilizando los productos Sentinel-2 MSI L2A y aprendizaje automático.
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Jun 5, 2024 - HTML
Configure workflow/pipeline tests using yaml files.
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Jun 4, 2024 - Python
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
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Jun 4, 2024 - Nextflow
The CGR GWAS QC processing workflow.
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Jun 4, 2024 - Python
A Snakemake workflow for Chandra data reduction
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Jun 4, 2024 - Python
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