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Issues list

--quiet settings not intuitive bug Something isn't working
#2882 opened May 17, 2024 by pdimens
nested for loop in f-string bug Something isn't working
#2881 opened May 17, 2024 by sneuensc
Ensure stable conda environments via pixi lockfile support enhancement New feature or request
#2880 opened May 17, 2024 by irm-codebase
archive cli docs inconsistent with code bug Something isn't working
#2877 opened May 15, 2024 by nate-d-olson
--singularity-args quotes not propagated to cluster job script bug Something isn't working
#2872 opened May 13, 2024 by dkoppstein
1
Customize location of .snakemake directory enhancement New feature or request
#2867 opened May 9, 2024 by gipert
remove --cluster from v8.x enhancement New feature or request
#2866 opened May 8, 2024 by conchoecia
False detection of formatting issues. bug Something isn't working
#2865 opened May 7, 2024 by agbioinformatics
1
wrong python path is used when running python script with named conda environment bug Something isn't working
#2861 opened May 3, 2024 by Marcel-Mueck
document ChildIOException enhancement New feature or request
#2848 opened Apr 26, 2024 by rueberger
keep_local does not keep remote files locally bug Something isn't working
#2844 opened Apr 24, 2024 by Hugovdberg
ModuleNotFoundError: No module named 'asyncore' bug Something isn't working
#2841 opened Apr 24, 2024 by PandengWang
2
incompatibility with using rules.rulename.output and importing snakefile as a module, using use rule a from somemodule as a with... bug Something isn't working
#2838 opened Apr 23, 2024 by LukaP-BB
3
Bind current working directory to container enhancement New feature or request
#2837 opened Apr 23, 2024 by fgvieira
Error when using wrappers and use rule as bug Something isn't working
#2836 opened Apr 23, 2024 by fgvieira
question: SFTP options
#2835 opened Apr 22, 2024 by SanVerb
carbon footprint in report enhancement New feature or request
#2834 opened Apr 22, 2024 by daaaaande
2
Incorrect shell command executed when defined within a loop. bug Something isn't working
#2832 opened Apr 21, 2024 by ethan-shanahan
5
--cluster-config BsubInvocation Error bug Something isn't working
#2828 opened Apr 19, 2024 by suhridbuddha
1
--show-failed-logs if binary file used as log file bug Something isn't working
#2826 opened Apr 19, 2024 by votti
--until not working with checkpoints bug Something isn't working
#2824 opened Apr 18, 2024 by nkt97
4
Incomplete DAG with checkpoints bug Something isn't working
#2822 opened Apr 18, 2024 by fgvieira
3
Make --cores a forbidden parameter if an executor is used. enhancement New feature or request
#2821 opened Apr 18, 2024 by sven0schuierer
Add possibility to provide empty default resources in a profile (as was possible with SnakeMake 7.x.x) enhancement New feature or request
#2820 opened Apr 18, 2024 by sven0schuierer
Using option --drmaa_logs crashes snakemake bug Something isn't working
#2819 opened Apr 18, 2024 by sven0schuierer
ProTip! What’s not been updated in a month: updated:<2024-04-19.