Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

A comparison of data integration methods for single-cell RNA sequencing of cancer samples

This is a repository for the publication "Spatially-Resolved, Single Cell Transcriptome Mapping of the Arbuscular Mycorrhizal Symbiosis" in which authors applied single-nuclei RNA-seq and spatial RNA-seq to the symbiosis between Medicago truncatula and Rhizophagus irregularis.

Coupling of oxytocin and cholecystokinin pathways in the hypothalamus is required for gut-to-brain homeostatic feeding control

Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.

Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

R scripts used to analyze single-nucleus RNA-seq data generated from in vitro differentiated pancreatic organoids, described in Huang, L. et al. 2021 (in press).

code for "Drosophila PDGF/VEGF signaling from muscles to hepatocyte-like cells protects against obesity"

Framework for investigation of cell-type-specific regulation and expression in rare disease

Single Nuclei RNA Sequencing analysis of MND muscle cultures for the paper "Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease" by Ding et al, published in Acta Neuropathologica Communications.