rna-velocity
Here are 23 public repositories matching this topic...
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
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Jun 13, 2024 - R
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
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Jun 21, 2024 - Python
𝒫robabilistic modeling of RNA velocity ⬱
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Jun 12, 2024 - Python
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
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Jun 10, 2024 - Python
CellRank: dynamics from multi-view single-cell data
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Apr 23, 2024 - Python
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
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Dec 16, 2023 - Jupyter Notebook
Predict RNA velocity through deep learning
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Dec 12, 2023 - Jupyter Notebook
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
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Dec 5, 2023 - R
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
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Nov 13, 2023 - R
Simulation based inference of differentiation trajectories from RNA velocity fields.
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Aug 22, 2023 - Python
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
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Aug 18, 2023 - Jupyter Notebook
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
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Aug 15, 2023 - Python
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
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Jul 25, 2023 - Jupyter Notebook
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
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Jul 7, 2023 - R
collab | DFC
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Jul 6, 2023 - Jupyter Notebook
Tutorials for using BRIE
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May 29, 2022 - Jupyter Notebook
A guide to using a Seurat object in conjunction with RNA Velocity
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Dec 25, 2021
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