Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
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Updated
Jun 21, 2024 - Python
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
CellRank: dynamics from multi-view single-cell data
A guide to using a Seurat object in conjunction with RNA Velocity
Module 4 for HKU Single-cell Workshop
Predict RNA velocity through deep learning
𝒫robabilistic modeling of RNA velocity ⬱
Simulation based inference of differentiation trajectories from RNA velocity fields.
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
R pacakge for RNA velocity estimation with nonlinear models
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
collab | DFC
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
Dynamical systems methods for RNA velocity analysis
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
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