JensUweUlrich / Taxor Star 16 Code Issues Pull requests Fast and space-efficient taxonomic classification of long reads bioinformatics taxonomy metagenomics long-read microbiome kmer em-algorithm taxonomic-classification refseq bioinf long-read-sequencing xor-filter taxonomic-profiling syncmer pseudo-alignment interleaved-xor-filter Updated Mar 22, 2024 C++
BimberLab / nimble-aligner Star 1 Code Issues Pull requests nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data rust fast rna-seq bio alignment multiplatform nimble rust-bio pseudo-alignment ohsu-vgti Updated Jun 6, 2024 Rust
BimberLab / nimble Star 1 Code Issues Pull requests nimble — execute lightweight, flexible alignments on arbitrary reference libraries python rust fast rna-seq bio multiplatform 10x nimble aligner pseudo-alignment Updated Jun 6, 2024 Python