A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
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Updated
May 23, 2024 - Python
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
R package for the MoTrPAC community
A repository for the Playbook Workflow Builder project.
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
National Microbiome Data Collaborative (NMDC) unified data model
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
R Package for preprocessing, normalizing, and analyzing proteomics data
Export MS Annika crosslink results to different formats.
A Framework for IMS-MS Raw Data Processing written in Rust and Python.
Low level infrastructure to handle MS spectra
Repository for MODS subphenotype preprint, data, and code.
A collection of Galaxy-related training material
A bioinformatics project that aims to extend existing computational methods to predict (problematic) Protein Complexes from noisy PPINs and improve their performance.
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
R package for the analysis of Multiplex Substrate Profiling by Mass Spectrometry for Proteases (MSP-MS) Data
Exon is an OLAP query engine specifically for biology and life science applications.
PDV: an integrative proteomics data viewer
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
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