Issues: Nesvilab/FragPipe
Incompatible Windows region configuration breaks FragPipe 21.0
#1378
by WeiqiangChen
was closed Dec 20, 2023
Closed
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Annotation file for analyzing CPTAC whole proteome data
#1586
opened May 20, 2024 by
emilyhmwong-vir
Discrepancies in charge state assignment and PTM detection when Reanalyzing data with Fragpipe
#1581
opened May 16, 2024 by
Mathieu-Maessen
Quantify unmatched peptide like features
feature request
low-priority
#1553
opened Apr 24, 2024 by
eldenrowland
Open search on non-Tryptic peptides
Philosopher
PTM-Shepherd
#1418
opened Jan 22, 2024 by
WrennPockTwo
IonQuant error in TMT16 workflow with Thermo raw but not mzml
IonQuant
#1379
opened Dec 20, 2023 by
enonimos
Glycan identification in "combined_modified_peptide.tsv" file
IonQuant
#1224
opened Aug 24, 2023 by
mwfoster
Different dimethyl labels on different lysines within same peptide
enhancement
MSFragger
#1083
opened Apr 17, 2023 by
p-bell
Feature request: Specifying multiple fasta files
enhancement
FragPipe
low-priority
#1081
opened Apr 13, 2023 by
hollenstein
Feature request: Add retention time information to ion.tsv table
enhancement
IonQuant
#1072
opened Apr 6, 2023 by
hollenstein
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