lmc297 / BTyper3 Star 16 Code Issues Pull requests In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data taxonomy mlst virulence-factor average-nucleotide-identity multi-locus-sequence-typing bacillus bacillus-cereus Updated May 8, 2024 Python
lmc297 / seq2mlst Star 7 Code Issues Pull requests In silico multi-locus sequence typing (MLST) for bacterial genomes mlst multi-locus-sequence-typing bacterial-genomes Updated Apr 20, 2018
lmc297 / BTyper Star 6 Code Issues Pull requests Rapid, in silico characterization of Bacillus cereus group isolates using WGS data mlst average-nucleotide-identity virulence-gene antimicrobial-resistance-genes multi-locus-sequence-typing bacterial-genomes bacillus Updated Sep 29, 2022
lmc297 / BMiner Star 1 Code Issues Pull requests A companion application for analyzing and viewing BTyper output files in aggregate mlst virulence-gene antimicrobial-resistance-genes multi-locus-sequence-typing bacterial-genomes bacillus Updated Mar 30, 2021 R
eliottBo / MLSTclassifier_cd Star 0 Code Issues Pull requests multi-locus sequence type clade classifier for Clostridioides difficile classifier machine-learning bioinformatics tool microbiology mlst multi-locus-sequence-typing clade Updated Mar 30, 2024 Python