🦠📇 Microbial genomes-to-report pipeline
-
Updated
Jun 19, 2024 - Python
🦠📇 Microbial genomes-to-report pipeline
MiGA: Microbial Genomes Atlas
Tool for generating influenza A virus genome sequences from FASTQ data
Build a partitioned pangenome graph from microbial genomes
R Shiny App to show basic features of microbial genomes
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Pipeline to perform alignment & variant calling on whole-genome sequence data
Genomewide Epistasis Analysis on Bacteria
Automated genomic analysis of HCV sequence data
Lightweight bioinformatics pipeline for microbial genome recovery
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
A genome visualization python package for comparative genomics
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
Extension to HBV-GLUE - incorporates all sequences from GenBank.
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Add a description, image, and links to the microbial-genomics topic page so that developers can more easily learn about it.
To associate your repository with the microbial-genomics topic, visit your repo's landing page and select "manage topics."