yangao07 / abPOA Star 109 Code Issues Pull requests abPOA: an SIMD-based C library for fast partial order alignment using adaptive band simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format Updated Apr 21, 2024 C
Xinglab / abPOA Star 12 Code Issues Pull requests abPOA: an SIMD-based C library for fast partial order alignment using adaptive band simd long-reads multiple-sequence-alignment partial-order-alignment banded-dp consensus-sequence Updated Jul 20, 2023 C
BCCDC-PHL / FluViewer Star 1 Code Issues Pull requests Tool for generating influenza A virus genome sequences from FASTQ data microbial-genomics consensus-sequence influenza-virus Updated Jun 17, 2024 Python
clabe-wekesa / SATO Star 0 Code Issues Pull requests A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis. mrbayes multiple-sequence-alignment phylogenetic-analysis fasttree consensus-sequence sequence-cleaner Updated Mar 15, 2024 Python