iliapopov17 / The-shadow-of-HIV Star 3 Code Issues Pull requests Repository for course project in Bioinformatics Institute 2023-2024 snakemake dna beta-diversity iontorrent hiv samtools bowtie2 relative-abundances alpha-diversity kraken2 differential-abundance-analysis maaslin2 Updated May 20, 2024 Jupyter Notebook
Zubair2021 / 16S_Microbiome_Analysis Star 2 Code Issues Pull requests This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio pipeline deseq2 16s microbiota microbiome-analysis qiime2 maaslin2 Updated Oct 16, 2023 Shell
qplevier / geneset-visualisation-pipeline Star 0 Code Issues Pull requests snakemake cytoscape limma gsea wgcna maaslin2 enrichmentmap Updated May 9, 2024 Java