Pipeline for performing routine genome assembly
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Updated
Jun 7, 2024 - Nextflow
Pipeline for performing routine genome assembly
Pipelines for the production of Treeval data
Genome assembly steps (Haliotis asinina)
Implementation of ToL genome assembly workflows
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
Mitochondrial Long-read Iterative Assembly
SPAdes Genome Assembler
This repo house the scripts for de-novo genome assembly, assembly polishing, assessing assembly quality of PacBio HiFi whole genome sequence data and downstream pangenomics analysis to identify some structural variants
VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.
This is a template for all assembly projects. Please read the instructions below on how to use it.
Simple bacterial assembly and annotation pipeline
Telomere-2-Telomere Genome from Saudi Arabia
Library-free horizontal transfer detection, with a focus on transposable element invasions
A program for assessing the T2T genome continuity
Repo containing all scripts associated with huhu nanopore data
Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Reflexiv - a distributed genome assembler using Reflexible Distributed Kmer
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Scripts associated with kakī (*Himantopus novaezelandiae*) genome assembly using HiFi data
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