⚡ ♒ Rapid prokaryotic genome annotation
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Updated
Apr 10, 2024 - Perl
⚡ ♒ Rapid prokaryotic genome annotation
A flexible pipeline for complete analysis of bacterial genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Simple bacterial assembly and annotation pipeline
Bioinformatics tool to find integrons in bacterial genomes
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Machine-learning-based general bacterial promoter prediction tool.
Combining de novo and reference-guided assembly with Scaffold_builder
Fast k-mer based tool for multi locus sequence typing (MLST)
SNP and variant calling pipeline for bacteria
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
genome sized sequences clustering
R package to perform data pre-processing for more informative bacterial GWAS
Various scripts for efficient processing of 10k Salmonella genomes
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
In silico multi-locus sequence typing (MLST) for bacterial genomes
Bioinformatics pipeline for nanopore sequencing data
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
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