A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Updated
Jun 28, 2024 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Scripts used by George S. Long
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
An archaeogenetic genotype data organisation file format
R Package - Spatiotemporal Ancestry Interpolation and Search
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
Website for a ~2h demonstration of Poseidon and some of its tools, features and components
Pipeline for generation of fasta unique capture-probes from a set of genomes
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
Coprolite host Identification pipeline
Ancient DNA Read Simulator for Metagenomic
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Estimating temporally variable selection intensity from ancient DNA data
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