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A test run with long read data and the following read splitting options resulted in an error:
read2tree [ ... options ... ] --read_type long --split_reads --split_len 20000 --split_overlap 1000
RuntimeError: generator raised StopIteration
This appears to be an issue with FastxReader.py caused by Python>=3.7, as detailed in https://stackoverflow.com/questions/51700960/runtimeerror-generator-raised-stopiteration-every-time-i-try-to-run-app
FastxReader.py
Recoding FastxReader.py (on my local machine) to handle the StopIteration as described in that post seems to fix the issue.
StopIteration
The text was updated successfully, but these errors were encountered:
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A test run with long read data and the following read splitting options resulted in an error:
This appears to be an issue with
FastxReader.pycaused by Python>=3.7, as detailed in https://stackoverflow.com/questions/51700960/runtimeerror-generator-raised-stopiteration-every-time-i-try-to-run-appRecoding
FastxReader.py(on my local machine) to handle theStopIterationas described in that post seems to fix the issue.The text was updated successfully, but these errors were encountered: