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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 136 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 54 4

  3. OMArk OMArk Public

    Python 44 6

  4. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 26 10

  5. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 19 7

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 14 5

Repositories

Showing 10 of 38 repositories
  • phylo-io Public

    Phylo.IO JS tree viewer

    DessimozLab/phylo-io’s past year of commit activity
    JavaScript 26 MIT 10 5 1 Updated Jun 25, 2024
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 19 MPL-2.0 7 1 1 Updated Jun 21, 2024
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 54 MIT 4 6 0 Updated Jun 19, 2024
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 0 Updated Jun 18, 2024
  • gethogs Public

    A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

    DessimozLab/gethogs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 18, 2024
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 14 LGPL-3.0 5 2 1 Updated Jun 17, 2024
  • OmaStandalone Public

    OMA standalone repository

    DessimozLab/OmaStandalone’s past year of commit activity
    Python 2 2 5 1 Updated Jun 17, 2024
  • read2tree Public

    a tool for inferring species tree from sequencing reads

    DessimozLab/read2tree’s past year of commit activity
    Python 136 MIT 18 19 0 Updated May 8, 2024
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog’s past year of commit activity
    Python 3 0 0 1 Updated May 3, 2024
  • OMArk Public
    DessimozLab/OMArk’s past year of commit activity
    Python 44 LGPL-3.0 6 6 1 Updated Apr 19, 2024

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