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upd seqstats sub-workflow
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vmikk committed Aug 8, 2023
1 parent a49d13c commit 6f9e110
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -2947,14 +2947,16 @@ workflow seqstats {
// Input file with multiplexed reads (FASTQ.gz)
ch_input = Channel.value(params.input)

// Validate tags
tag_validation(ch_barcodes)

// Initial QC
qc_se(ch_input)

// Demultiplexing
demux(
qc_se.out.filtered,
ch_barcodes)
tag_validation.out.fasta)

// Check primers
primer_check(
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