Update manual.pdf

.gitignore

@@ -1,17 +1,11 @@
-
 # python3
 __pycache__/
-venv/
-
-.idea/workspace.xml
-
-# movies
-*.mp4
 
 # C/C++
 *.exe
 *.o
 *.so
 
 # docs
-doc/
+doc/latex/
+doc/html/

Doxyfile

@@ -32,19 +32,19 @@ DOXYFILE_ENCODING = UTF-8
 # title of most generated pages and in a few other places.
 # The default value is: My Project.
 
-PROJECT_NAME = "My Project"
+PROJECT_NAME = "Understanding Breakthrough Curves"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. This
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER =
+PROJECT_NUMBER = "v0.1"
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF =
+PROJECT_BRIEF = "Software and Data Associated with *Understanding Fast Adsorption in Single-Solute Breakthrough Curves*"
 
 # With the PROJECT_LOGO tag one can specify a logo or an icon that is included
 # in the documentation. The maximum height of the logo should not exceed 55
@@ -233,7 +233,7 @@ MULTILINE_CPP_IS_BRIEF = NO
 # documentation blocks is shown as doxygen documentation.
 # The default value is: YES.
 
-PYTHON_DOCSTRING = YES
+PYTHON_DOCSTRING = NO
 
 # If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the
 # documentation from any documented member that it re-implements.
@@ -277,7 +277,7 @@ ALIASES =
 # members will be omitted, etc.
 # The default value is: NO.
 
-OPTIMIZE_OUTPUT_FOR_C = NO
+OPTIMIZE_OUTPUT_FOR_C = YES
 
 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
 # Python sources only. Doxygen will then generate output that is more tailored