Skip to content

Issues: tseemann/barrnap

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

30 Open 26 Closed
30 Open 26 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bug getfasta with --outseq
#68 opened Feb 9, 2024 by johanzi
Error: Invalid alphabet type in target for nhmmer.
#66 opened Jun 28, 2023 by theo-allnutt-bioinformatics
SILVA version?
#65 opened Apr 12, 2023 by Unaimend
1
Building eukaryotic rrna operon database
#63 opened Mar 27, 2022 by DeniRibicic
barrnap
#62 opened Mar 24, 2022 by 473021677
barrnap doesn't create any output
#61 opened Mar 24, 2022 by neelam19051
Fail if Bedtools issues a fasta normalization error
#60 opened Aug 17, 2021 by jdwinkler-lanzatech
barrnap-v0.9 debian package has incomplete database
#59 opened Aug 2, 2021 by thackl
2
please add option to force overwrite .fai index during, or automatically delete fai file after barrnap run
#58 opened May 14, 2021 by jvollme
calling two overlapping sequences separate partial 16S sequences
#57 opened May 4, 2021 by ileleiwi
[barrnap] ERROR: nhmmer failed to run
#55 opened Jan 29, 2021 by nick-youngblut
3
nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA
#54 opened Jan 16, 2021 by minjinhan
6
GFF output and Fasta-headers give different start-coordinates of rRNA-genes
#53 opened Jan 13, 2021 by jvollme
Cannot specify a file on cmdline?
#52 opened Jan 7, 2021 by wwood
Adding fungal HMM
#48 opened Dec 14, 2020 by danwiththeplan
4
Overlapping 5.8S and 28S annotations in Eukaryotic rDNAs
#47 opened Nov 17, 2020 by BartvdVossenberg
4
possible option for "prokaryotic" search (archaeal + procaryotic)?
#46 opened Nov 6, 2020 by jvollme
Could the barrnap be used to predict the rrna of *.fna.gz file?
#45 opened Oct 7, 2020 by YulinzhangSia
1
Can not find required 'nhmmer'
#44 opened Sep 5, 2020 by Lcornet
1
What does column 8 stand for?
#43 opened Aug 19, 2020 by roey-angel
Add --slow/--accurate mode that uses RFAM/Infernal enhancement
#39 opened Oct 20, 2019 by tseemann
@tseemann
Error: Cannot write foo.fa.fai index bug
#38 opened Oct 17, 2019 by tseemann
@tseemann
Mycobacteria & 5S rRNA
#36 opened Apr 5, 2019 by ppgardne
archaea and bacteria 16S duplicate
#35 opened Feb 11, 2019 by chloelulu
@tseemann
1
Check versions of bedtools is >= 2.27 enhancement
#34 opened Oct 31, 2018 by tseemann
@tseemann
1
ProTip! Mix and match filters to narrow down what you’re looking for.