A Julia package for single cell and spatial data analysis
-
Updated
Jun 20, 2024 - Julia
A Julia package for single cell and spatial data analysis
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
A Julia package for single cell and spatial data analysis
Spatial alignment of single cell transcriptomic data.
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Code for the spatialLIBD R/Bioconductor package and shiny app
R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Pipeline for SpatialTranscriptomics and 10X Visium data
Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.
Repo linked to our recent publication in Science Advances
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Image processing pipeline for spatial projects
Course Assignment on Clustering of Spatial Transcriptomics Data
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Add a description, image, and links to the visium topic page so that developers can more easily learn about it.
To associate your repository with the visium topic, visit your repo's landing page and select "manage topics."