Source files for my PhD thesis "Brain functional connectivity and its aberrations in mouse models of autism"

Python tool for spatially normalizing diffusion MRI data

We provide a method to extract the tractographic features from structural MR images for patients with brain tumor

Docker container for FiberNavigator for Brainlife.io

Connectivity-based parcellation

OG 2019 - Project 04: Novel neuronavigation to guide brain stimulation

LiFE-GPU-opt software is an optimized implementation of the compute-intensive matrix operations of the LiFE algorithm for GPUs.

This repository extracts the tractograpic feature, other first-order features and the state-of-the-art feature from the stroke lesion. A random forest regressor is used with one type of feature to predict the modified Rankin Scale of stroke patients.

Tract Segmentation from input tractography using ROIs

A toolkit for developing reinforcement algorithm for diffusion weighted image analysis.

Automatic Tractography Tool

Bend, twist, spread... TrackerYoga is a set of synthetic diffusion MRI data for testing tractography algorithms.

This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors base…

Scripts for MRI preprocessing

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

Brainlife wrapper app for dipy_track workflows.

Brainlife wrapper app for dipy_track_pft workflows.

Quick and dirty way of performing Sholl analysis after tractography

Method for encoding brain connectomes in multidimensional arrays (tensors).