Snakemake-based computational workflow for neoantigen prediction from diverse sources
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Updated
Jun 27, 2024 - Python
Snakemake-based computational workflow for neoantigen prediction from diverse sources
FRASER - Find RAre Splicing Events in RNA-seq
10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://alihamraoui.github.io/AsaruSim/
all the scripts to reproduce the results in the splam paper
✂️ Deep learning-based splice site predictor that improves spliced alignments
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
Image Forgery Detection using Deep learning Graduation project
A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools
A tool for calculating PPI network rewiring due to alternative splicing
Bioinformatics Programming - Transcriptome Assembly
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
regulAS: Bioinformatics Toolset for ML-assisted Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data
A Google Colab notebook/web server for predicting splice sites from a single sequence using Pangolin
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