MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
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Updated
Jun 19, 2024
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
A simple python script to fix scan numbers in result files generated by Proteome Discoverer.
A script and functions to group and validate MS Annika results.
Tools for chemometrics and machine learning on high-dimensional data (e.g. Partial least squares regression/discrimination)
Generate a spectral library for Spectronaut from MS Annika results.
MASSIVEChem is a pip-installable package centred around mass spectrometry
Examples of scripts with package Jchemo (Training material)
A Windows application for OceanInsight USB2000 and SR2 spectrometers
BecqMoni Nuclear edition
Pyra: Automated EM27/SUN Greenhouse Gas Measurement Software
Export MS Annika crosslink results to different formats.
The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry centric fashion.
Core scripts for FluoroMatch, LipidMatch, and PolyMatch
Python control of an electrothermal atomizer system - programming fragments and studies
Clean mass spectrometry imaging dataset and extract geologically meaningful features
A script to merge and optionally validate several MS Annika search results.
Repository of datasets (chemometrics and others) in various formats (JLD2, etc.)
Extensions to use the cross-linking tool Scout with other software.
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
Python package for reading Bruker OPUS files.
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