Bioinformatics-pipeline in snakemake.
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Updated
Sep 6, 2021 - R
Bioinformatics-pipeline in snakemake.
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
Ribofilio is a python tool to estimate ribosomes drop off rate.
A snakemake based workflow for ChIPSeq data analysis
The evaluation of MERFISHtools and the underyling model as published in the corresponding article.
Origin mechanisms of SAARs – use case of L-SAARs in signal peptides among higher Eukaryotes
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
Snakemake based workflow for analysis of dnaseq data for calling germline/somatic mutations
Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
Snakemake workflow for preprocessing fast files
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
multiple imputation for association studies
Trimming and QC on NGS data
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
Snakemake workflow for processing small RNA-seq libaries
A minimal Snakemake pipeline.
A Snakemake workflow for RNA-seq analysis
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