Different Job Scripts on HPC

Slurm is an open-source, highly configurable job scheduler for managing and optimizing the workload on HPC clusters. It provides a framework for job submission, resource allocation, and job tracking, enabling efficient utilization of computing resources.

SLURM Monitor to detect node health and notify Slack in case of events. Mirror of https://github.com/bencardoen/SlurmMonitor.jl

A wrapper for the SLURM job handler on high-performance computer clusters

Build slurm scheduler at Rocky Linux 8 with pmix using github actions.

Basic puppet module to manage packges, directories and files of the different slurm aspects. However, does NOT manage the slurm config in /etc/slurm/ - by intention!

Repo to demonstrate how to launch parallelized array job in Slurm

Zig bindings for Slurm

Slurm job scripts to run and analyze molecular dynamics simulations on high performance computers

A test Docker build for SLURM with the SLURM REST API configured.

Large-scale implementation (using the Split-Apply-Combine paradigm) of different metabolic adaptation models of species in a 2-species co-culture, based on a Consumer-Resource modeling framework in a Serial-Dilution setup, where species compete for nutrients that are supplied periodically.

Example on how to leverage Singularity on HPC. Mirror of https://github.com/bencardoen/singularity_slurm_cuda

In this project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.

Convert Mass Spectrometry Files using msconvert, singularity and SLURM

Testing parallel file creation using SLURM

This is an importable python package that provides an Enum containing SLURM sbatch/srun environment variables.

A quick and automated way to setup your Slurm mini cluster

Code repository for the big-data/programming3 course of the Master Data Science for Life Sciences

This repo contains a slurm test suite which can be used to test new hardware automatically. This includes checking the availability of modules and, at a later stage, more complex programs and parallelization

A set of handy scripts and tools that helps you create, manage, and run your SAM project. Frodo supports `SLURM` workload manager and can parallelize your simulation over multiple nodes.