pfam
Here are 25 public repositories matching this topic...
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
-
Updated
Nov 13, 2019 - Python
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
-
Updated
Oct 20, 2023 - Python
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
-
Updated
May 3, 2017 - Jupyter Notebook
Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz
-
Updated
Jan 9, 2020
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
-
Updated
Jun 20, 2023 - Common Workflow Language
Set of tools for protein sequence enrichment and protein domain finding
-
Updated
Jun 1, 2022 - Python
Find NLR hmms in protein sequences.
-
Updated
Apr 10, 2024 - Shell
A deepchain-app to predict protein family 🔬
-
Updated
May 12, 2021 - Jupyter Notebook
-
Updated
Nov 8, 2018 - Python
PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …
-
Updated
Jan 1, 2023 - Python
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
-
Updated
Apr 14, 2022 - R
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
-
Updated
Apr 17, 2019 - JavaScript
PFAM's micro service to assist to Mistic2.
-
Updated
Feb 15, 2023 - Python
Improve this page
Add a description, image, and links to the pfam topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the pfam topic, visit your repo's landing page and select "manage topics."