WisecondorX — An evolved WISECONDOR
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Updated
Apr 24, 2024 - Python
WisecondorX — An evolved WISECONDOR
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Genomic Interval Operations on Pandas DataFrames
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Metagenomic pipeline and other general scripts used in the lab.
Publication quality NGS track plotting
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
HemTools: a collection of NGS pipelines and bioinformatic analyses
This tutorial is created for educational purpose
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
SIB course that introduces analysis of NGS data
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Using combined evidence from replicates to evaluate ChIP-seq peaks
Project Manager for NGS data analysis
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
GitHub for the SIB courses NGS - Genome variant analysis
Workshop • Intro to Bioinformatics using NGS data • 5 days
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