Quick access to gene synonyms
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Updated
Jun 16, 2024 - R
Quick access to gene synonyms
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
LAMBDA – the Local Aligner for Massive Biological DatA
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Download genomes from NCBI GenBank FTP site
GPT (Decoder only Transformer - from scratch) generated fake/phoney taxonomies (based on NCBI taxonomy dataset)
Assign taxonomy with blast, can be used for qiime
Julia package to handle the NCBI Taxonomy database.
Wrapper around the NCBI taxonomy files
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
🐣 locally query the ncbi taxonomy
Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
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