microbial-genomics
Here are 125 public repositories matching this topic...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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Jun 14, 2024 - Python
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
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Jun 1, 2024 - Python
Collection of scripts for bacterial genomics
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Dec 6, 2019 - Perl
Build a partitioned pangenome graph from microbial genomes
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Jun 19, 2024 - Python
A genome visualization python package for comparative genomics
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May 26, 2024 - Python
From genomes to phenotypes: Traitar, the microbial trait analyzer
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Aug 12, 2019 - Python
Estimate metagenomic coverage and sequence diversity
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Feb 22, 2022 - C++
An easy way of MLSTyping your genomes in R.
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Dec 21, 2020 - R
In silico serotype prediction for Listeria monocytogenes
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Feb 26, 2023 - Python
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
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Nov 28, 2018 - HTML
A pipeline for high-quality bacterial genome construction using ONT sequencing
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Sep 22, 2022 - HTML
A tool for drawing ANI clustermap between all-vs-all microbial genomes
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Nov 7, 2023 - Python
MiGA: Microbial Genomes Atlas
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Jun 17, 2024 - Ruby
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
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Nov 7, 2023 - Python
Microbial Genome Circular plotting tool for comparative genomics using Circos
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Feb 1, 2023 - Python
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Mar 2, 2020 - Python
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
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Apr 16, 2024 - Python
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
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May 22, 2024 - Python
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
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Mar 12, 2024 - Python
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