ViewVir - A pipeline to visualize viral metatranscriprome data
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Updated
Jun 20, 2024 - Python
ViewVir - A pipeline to visualize viral metatranscriprome data
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
An analysis and visualization platform for 'omics data
sensitive and precise assembly of short sequencing reads
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
Metagenomics and Metatranscriptomics pipeline
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
gNOMO2 allows integrated multi-omics analyses of microbiomes
deep neural networks on metagenomics transcriptomics and expression levels.
SortMeRNA: next-generation sequence filtering and alignment tool
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
A pipeline for TotalRNA analysis
Meta-Omics Software for Community Analysis
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Interactive visualisation and data annotation for meta-omics data
Study of farmed oysters and nitrogen cycling in Point Judith Pond, RI. Scripts for analysis of 16S rRNA amplicon and metatranscriptomic data.
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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