case studies for removing tidal signal from DO time series
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Updated
May 19, 2015 - R
case studies for removing tidal signal from DO time series
Identifying proteins and metabolic pathways associated with the neuroprotective response mediated by tibolone in astrocytes under an induced inflammatory model.
An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in different metabolic scenarios was included. This is an implementation of the algorithm described by Lee et al. (2012) in DOI: 10.1186/1752-0509-6-73.
quick and dirty eval of metab estimates on SPAM project before/after detiding
Dockerfile to set up omics DB and preinitialized databases
The aim of this repository is to assist in further improving and expanding the genome-scale human metabolic reconstruction through the use of issues. Please note that pull requests will be automatically closed.
PathVisio plugin to find relevant metabolic reactions from Rhea
STW-VIDI project "tomato rearm themselves"
Spatial Microsimulation Urban Metabolism (SMUM)
Core cancer metabolism model of Palsson et al: https://rdcu.be/Olwc
Repository associated with Jenior ML, et al. (2018). mSphere.
Supplementary code of Cox et al., 2019
Physically Based Modelling of Cirdadian Glucose Dynamics
Perform multiple night time regressions on O2 data to obtain the gas transfer velocity in streams. It saves the best fit for every day of data
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
Parser for the BRENDA enzyme (EC number) database
Genome-scale metabolic model of Methylococcus capsulatus.
Keep track of date/dosage of medication administration history
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