The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jun 8, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Computational synthetic biology: Predicting DNA edits for bioengineering
Reinforcement Learning based bioretrosynthesis tool
Genome-scale model of Yarrowia lipolytica.
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
A Universal Modeling Language for Metabolic Flux Analysis
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
Genome-scale metabolic model of Rhodotorula toruloides
Suite of tools that work on rpSBML format
EMILiO
Diversity-based enumeration of optimal context-specific metabolic networks
Genome-scale metabolic model of Cordyceps militaris
Python wrapper for Retropath2.0 Knime workflow
A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.
Library to perform metabolic engineering tasks
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