Software for the analysis and interactive exploration of spectral imaging data
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Updated
Aug 25, 2020 - MATLAB
Software for the analysis and interactive exploration of spectral imaging data
Tool for converting mass spectrometry data to the imzML format.
Divisive Intelligent K-Means algorithm (DiviK) for joint feature selection and clustering of heavily multidimensional data.
Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
A tool for mass spectrometry data analysis.
SPUTNIK R package
A common data format for mass spectrometry imaging
This project provides an Spectre's implementation of Data Mining Group's algorithms for processing mass spectrometry imaging (MSI) datasets.
Analysis of matrix-metabolite adducts in MALDI mass spectrometry imaging datasets
Default preprocessing pipeline for MSI data in raw ASCII format based on Gaussian Mixture Modeling (GMM)
pyM²aia is a Python package for memory-efficient access and processing of mass spectrometry image data. The I/O functionality is derived from the interactive desktop application M²aia. Special features are the batch generator utilities for deep learning applications.
Nondestructive Spatial Lipidomics for Glioma Classification - Tissue Similarity and Grading
Repository of materials used in poster for IMSC 2018
Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.
Nondestructive Spatial Lipidomics for Glioma Classification - Tissue Similarity and Grading
This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/
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