This method incorporates dense linkage disequilibrium block structure of SNPs for prioritizing a set of genetic variants using GWAS summary statisticis before performing fine-mapping.
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Updated
Jan 17, 2023 - HTML
This method incorporates dense linkage disequilibrium block structure of SNPs for prioritizing a set of genetic variants using GWAS summary statisticis before performing fine-mapping.
By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.
echoverse module: LD downloading and processing
Visualizing Linkage Disequilibrium using 1000 Genomes Data
Implement R-prime measure of linkage disequilibrium
LDMAP software for mapping linkage disequilibrium using the Malecot-Morton model.
R package for the zalpha suite of selection statistics
Impact of LD regional heterogeneity on genome prediction and heritability estimation in livestock
Plot .ld with LDHeatmap (first case applied to Equine 65k Microarray)
LDlinkR: An R package for calculating linkage disequilibrium in human populations of interest
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
A tool for linkage disequilibrium-informed comparison of haplotypes among sibling embryos.
Calculating linkage disequilibrium in human populations of interest
Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink
Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.
A python library to develop genomic data simulators
ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
GWAS Pre-Processing Pipeline
This is web server API for http://topld.genetics.unc.edu
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