Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
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Updated
Jun 26, 2024 - Java
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
A selection of databases for Genestrip
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Count kmers with a more efficient (faster) hash table
a ruby function for kmer iterations and kmer graph preparation. estimates the kmers and gives occurrences as tab delimited
Obtain k-mer counts from fastx files
Very large scale k-mer counting and analysis on Apache Spark.
vue app with flask REST api to process genomic data
dna/rna alignment classifier
counts k-mers, written in rust
A kmer-based homology searching tool
K-mer counting algorithms and count-data utilities for the BioJulia framework
k-mer similarity analysis pipeline
Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.
fast and lightweight counting of short k-mers
Represents sequences files in fasta format in terms of their kmer counts.
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