counts k-mers, written in rust
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Updated
Sep 25, 2023 - Rust
counts k-mers, written in rust
Count kmers with a more efficient (faster) hash table
k-mer similarity analysis pipeline
Very large scale k-mer counting and analysis on Apache Spark.
fast and comprehensive k-mer counting package
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
K-mer counting algorithms and count-data utilities for the BioJulia framework
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
DNA classifier using Natural Language Processing. Used K-mer method to convert sequence strings into fixed size words
A kmer-based homology searching tool
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
Represents sequences files in fasta format in terms of their kmer counts.
Counting Bloom Filter Algorithm to count kmers
This is the Machine learning Project Repo.
Count canonical kmers with Abseil C++ `absl::flat_hash_map`
fast and lightweight counting of short k-mers
Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.
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