k-mer similarity analysis pipeline
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Updated
Dec 19, 2022 - Nextflow
k-mer similarity analysis pipeline
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Count kmers with a more efficient (faster) hash table
K-mer counting algorithms and count-data utilities for the BioJulia framework
counts k-mers, written in rust
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
dna/rna alignment classifier
fast and comprehensive k-mer counting package
Represents sequences files in fasta format in terms of their kmer counts.
Very large scale k-mer counting and analysis on Apache Spark.
Kmer counter is written in GO Lang v 1.16.5 To install GO on Windows, follow the instructions at https://golang.org/doc/install 4 GO implementation of N-mer counter in DNA sequences which tests for validity of input. It reads in file name (of fasta file) It reads the size length (kmer length) for which counts are desired and writes out to file, …
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
A kmer-based homology searching tool
Counting Bloom Filter Algorithm to count kmers
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
Count canonical kmers with Google sparse_hash_map
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