EXIS is an interactive R shiny application for isoform-specific expression analysis.
-
Updated
Jul 8, 2021 - R
EXIS is an interactive R shiny application for isoform-specific expression analysis.
Automated Isoform Discovery Detector (AIDD)
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools
Perform molecular dynamics experiments (MD) with NAMD on colab
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
A python module to read and plot Galaxy RNA-seq data
Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).
interactive visualization of single-cell transcriptomes
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
Single cell Nanopore sequencing data for Genotype and Phenotype
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Discover differential transcript usage from polyA-captured single cell RNA-seq data
Add a description, image, and links to the isoforms topic page so that developers can more easily learn about it.
To associate your repository with the isoforms topic, visit your repo's landing page and select "manage topics."