A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
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Updated
Mar 17, 2017 - Python
A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https…
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
Watch directories for the creation of illumina sequencer outputs. When detected, publish messages with details of the run to a TCP socket.
Automated mitochondrial genome assembly using SRA public data
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.
Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Pipeline to help design and analyze SPAR-seq experiments
A repository containing general scripts that are useful within bioinformatics
NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads
a shiny frontend for the nextflow-bcl pipeline
Simulator of metabarcoding sequencing runs - Glorified ART wrapper
Very simple Illumina SampleSheet validation in Rust. Make your biologists check their own custom SampleSheets! Can be compiled for Windows users.
A simple program to generate .vcf and plink format files from .idat files
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