A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
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Updated
May 17, 2024 - Python
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
🍶 Genome assembly with short sequence reads
⛓️ Construct a Physical Map from Linked Reads
⛓ Correct misassemblies using linked AND long reads
Pipeline for genome scaffolding by modelling distributions of HiC pairs
Method for rescuing collapsed contigs.
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Suite of tools for use in genome assembly and consensus. Work in progress.
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Wrapper tool of RaGOO by CWL and Docker
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
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